Minirhizotron Cameras for UHD Root & Rhizosphere Imaging

Vienna Scientific minirhizotron cameras are fixed diameter systems for root observation tubes of 5-10 cm of inner diameter (2 inch being the former "Bartz" standard = narrow gauge) – allowing for continued use of available minirhizotron tubes and to easily upgrade older / scanner-based imaging systems. Imaging systems for non-standard tube diameters can be realised upon request.

The imaging process can be (semi-)automatised including tube recognition (AC-19) in rhizotron facilities, and fully automatic, continuous imaging of pre-set locations under field conditions (AC-21). Classical positioning systems with manual indexing ("Smucker handle") but advanced rotational positioning are available (MS-190). In any case, precision in terms of imaging quality and repeatability of imaging locations is key. All imaging systems allow capturing Full HD / UHD images of selected areas (at the tube surface), easily allowing to adapt the monitored minirhizotron tube surface to research needs. Image size allows to align root length observations from MR-Ts e.g. to biomass sampling depth (e.g. 0-10 cm, 10-20 cm, ...) without recutting images. Imaging a depth gradient at a time, on predefined sides of the MR-T, is recommended when using angled MR-Ts - allowing for more accurate soil depth determination than other root imager systems on the market. The VSI minirhizotron imaging systems are either programmed and operated by a tablet or a laptop (Windows OS, dedicated Bartz ICAP or MR Editor software). Devices are powered by internal batteries (MS-190, AC-19), external 24 V batteries (AC-21) and/or power line (110-230V; MS-190, AC-21). Image naming follows the ICAP-scheme to be compatible with image analyses software world-wide (see below).

MR systems are based on transparent root observation tubes (MR-T) that are inserted tightly into the soil with MR soil corers of a dedicated, smaller diameter. A minirhizotron imaging device is then inserted into the tube to take images of (regrown) roots and the rhizosphere (incl. soil fauna and hyphae) as seen through the MR tube walls. The images are recorded and processed by a control unit for later analyses. See Rhizotrons to read more about the origin of minirhizotron. Various free and commercial analysis programmes have been developed for MR Images. Newer approaches heavily rely on Machine learning based techniques for fast root segmentation in the heterogeneous soil environment. 

Observing the development of root systems is key to understand plant performance in natural and production ecosystems (trees and crops), and i.a. an important mean to unravel water, carbon and nutrient dynamics of terrestrial ecosystems. Non-destructive imaging of roots and the rhizosphere can be used to determine a wide range of parameters (under controlled or abiotic and biotic stress conditions, in situ, rhizotron facilities / underground laboratories or the greenhouse / mesocosms, see image), including root system development, observation of root growth and turnover patterns, root distribution per depth (root system architecture, RSA), occurrence of mycorrhizal root tips and hyphal development, rhizobia development, and observations of soil fauna. Complement MR tubes with Sentek advanced soil moisture probes to characterize water, temperature (and electrical conductivity) at each rooting depth to better understand the abiotic factors influencing the root and rhizosphere dynamics observed. 

Minirhizotron imaging cameras thus have a wide range of applications in the study of plant roots, mycorrhizal hyphae, belowground pests such as Orobanche and other biotic and abiotic interactions within the hidden half of ecosystems. Ecosystems to apply MR imaging systems range from managed systems such as agricultural lands and forests, to pristine ecosystems, to studies in mesocosms and pots under controlled conditions (greenhouse, growth chambers).